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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_823217_823530_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
823217 - 823530
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
FDAEGKYTLFRCLLKTSNHA
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.1
0.7
1
82.9
32.5
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040095
812225 - 834431
22207
ENSAPLT00000015628
812613 - 834106
21494
ENSAPLT00000039583
811600 - 832747
21148
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000040809
808364 - 832747
24384