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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8233466_8240366_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8233466 - 8240366
Intron Length:
6901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCAA
5'SS Class:
major
3'SS Sequence:
CACTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAATTCTCAACG
Flanking Amino Acid:
RLDTIFFAKQVINNACATQA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66
41.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.7
0.69
0.8
76.5
31.7
Minor 5ss
29
-2.4
3.4
38
46.9
Minor BPS
58.5
0.13
1.6
60.28
41

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091