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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_823605_823692_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
823605 - 823692
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
VMTLCPMEYLRKKSLNMLQL
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.8
82.2
34.2
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000040809
808364 - 832747
24384
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040095
812225 - 834431
22207
ENSAPLT00000015628
812613 - 834106
21494
ENSAPLT00000039583
811600 - 832747
21148