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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_823735_824200_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
823735 - 824200
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTGTCCAACT
Flanking Amino Acid:
EFRDFINVPQDLVKVMTLCP
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.6
37
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
71.4
0.48
0.9
63.7
37
Minor 5ss
32.9
-1.9
2.9
41.2
44.6
Minor BPS
49.9
0.07
2.2
80.84
41

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040095
812225 - 834431
22207
ENSAPLT00000015628
812613 - 834106
21494
ENSAPLT00000039583
811600 - 832747
21148
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000040809
808364 - 832747
24384