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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8240639_8240734_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8240639 - 8240734
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAAAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
VIRQVHNSFARQQMFEFDAK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
71.6
40.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
39.3
-1.2
3.3
57.1
47.2
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091