About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8240866_8242706_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8240866 - 8242706
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
DGLREGPIDLGACNQDDWIS
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091