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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_824291_824660_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
824291 - 824660
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTCACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACTC
Flanking Amino Acid:
TEESMLSKGLDLFESCLLRM
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.8
30.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.8
0.65
0.8
72.8
30.9
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
52.5
0.06
1.8
65.51
41

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040095
812225 - 834431
22207
ENSAPLT00000015628
812613 - 834106
21494
ENSAPLT00000039583
811600 - 832747
21148
ENSAPLT00000032637
809960 - 832747
22788
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000040809
808364 - 832747
24384