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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8243968_8244363_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8243968 - 8244363
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
IAELQRQLAEEEPMDTDQSS
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
64.2
0.32
1.2
67.5
42.8
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
UCHL5
Ensembl Gene ID:
ENSAPLG00000002704
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002768
8230319 - 8247409
17091