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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_826325_828534_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
826325 - 828534
Intron Length:
2210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGAAATCTAACT
Flanking Amino Acid:
PFRHFATEIIDILQDIRELM
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
48.6
-0
1.9
68.65
41.3

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027550
798921 - 832747
33827
ENSAPLT00000040809
808364 - 832747
24384
ENSAPLT00000023118
808364 - 832747
24384
ENSAPLT00000040095
812225 - 834431
22207
ENSAPLT00000015628
812613 - 834106
21494
ENSAPLT00000039583
811600 - 832747
21148
ENSAPLT00000032637
809960 - 832747
22788