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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8297462_8298200_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8297462 - 8298200
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
ACTTACTTGATG
Flanking Amino Acid:
EAFDELLANKYGLAAFRAFL
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
75
0.62
1
65.3
41.5
Major PPT
75.2
0.57
0.7
68.8
31.7
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
59
0.14
1.6
61.5
40.7

Associated Gene:

Gene:
RGS2
Ensembl Gene ID:
ENSAPLG00000002397
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002406
8296674 - 8298836
2163