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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8298263_8298374_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8298263 - 8298374
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGGCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGATGCTGATGT
Flanking Amino Acid:
SKGGKHHAYYRPSPEEARLW
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.6
0.49
0.9
65.6
36
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
41.1
-0.6
2.2
56.99
45

Associated Gene:

Gene:
RGS2
Ensembl Gene ID:
ENSAPLG00000002397
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002406
8296674 - 8298836
2163