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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8298477_8298570_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8298477 - 8298570
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCCCTTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
CGGTGCTAAAGG
Flanking Amino Acid:
EAEKGRMKRTIIKDWKKRLS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
75.4
0.57
0.7
68.7
31.7
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
41.3
-0.8
2.3
43.02
48.3

Associated Gene:

Gene:
RGS2
Ensembl Gene ID:
ENSAPLG00000002397
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002406
8296674 - 8298836
2163