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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_830056_832077_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
830056 - 832077
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
TAGTGGTTAAAA
Flanking Amino Acid:
LEVIQNEKNKLCNPKELFLG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
46.3
-0.2
2.4
61.57
44.3

Associated Gene:

Gene:
GLMN
Ensembl Gene ID:
ENSAPLG00000014947
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023118
808364 - 832747
24384