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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_834510_834832_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
834510 - 834832
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTATTCTTGATT
Flanking Amino Acid:
AKGKPGRRRAGNKRSAALEN
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.2
0.64
0.9
70
40.5
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
71.2
0.75
1.1
79.97
35.9

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664