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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_834879_835652_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
834879 - 835652
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
CTTTATGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TATCCTTTATGT
Flanking Amino Acid:
AALENEDVAQRKAALEAATR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
82.2
0.72
0.9
75.8
37.8
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
54.3
0.21
1.9
74.42
42.4

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664