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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_835768_836429_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
835768 - 836429
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
GTTGTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTGTTGAACT
Flanking Amino Acid:
NITEEFLLNSGKNITPSHYK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
64.8
39.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.5
0.64
0.9
74.5
40
Minor 5ss
44.3
-0.6
3.2
68.6
42
Minor BPS
61.2
0.43
1.9
81.55
40

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664