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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8360349_8361069_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8360349 - 8361069
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
EFVQSDAIKQINIDYHMREA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.9
76.7
37
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
RGS1
Ensembl Gene ID:
ENSAPLG00000002313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002321
8359761 - 8363042
3282