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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8361850_8362475_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8361850 - 8362475
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTGTCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTACCTAAAGC
Flanking Amino Acid:
GIKASNSRNVVLSAEEVMQW
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
69.9
0.45
0.9
67.6
38
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
52.5
0.06
2.1
66.73
45.1

Associated Gene:

Gene:
RGS1
Ensembl Gene ID:
ENSAPLG00000002313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002321
8359761 - 8363042
3282