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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8362560_8362938_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8362560 - 8362938
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCATTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTCTGTTCATT
Flanking Amino Acid:
GKIHKKKQKAFGADLKNYLK
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.1
0.59
1
72.7
42.1
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
45.9
-0.2
2.4
69.3
42.1

Associated Gene:

Gene:
RGS1
Ensembl Gene ID:
ENSAPLG00000002313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002321
8359761 - 8363042
3282