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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_836529_836820_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
836529 - 836820
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TATATCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATGA
Flanking Amino Acid:
YPICQNKLENVPKQKYRIST
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.2
35.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.5
0.62
1
73.7
41.3
Minor 5ss
43
-0.8
2.8
57.2
40.7
Minor BPS
44.1
-0.4
2.3
59.61
46.3

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664