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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_836887_837044_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
836887 - 837044
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATACTTTACAT
Flanking Amino Acid:
NRVYDITERKCFCSNFCYRA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.5
0.71
0.9
72.6
42.4
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
49.9
0.07
1.8
66.89
43.7

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664