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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_837134_839095_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
837134 - 839095
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AAACTCTTCATT
Flanking Amino Acid:
RSPVWMREEEIPPDIELLKE
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
49.8
0.07
1.7
65.61
38.9

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664