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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8402320_8403303_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8402320 - 8403303
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCAAAATGAAAT
Flanking Amino Acid:
DFIEADAPKEINIDFHTRNH
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
89.6
0.89
0.6
84.5
23.5
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
42.9
-0.4
1.9
58.8
42.9

Associated Gene:

Gene:
RGS21
Ensembl Gene ID:
ENSAPLG00000002310
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002313
8401695 - 8406387
4693