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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8403471_8404071_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8403471 - 8404071
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCCTCTACCC
Flanking Amino Acid:
DSVDTLLANKDGLEAFRKFL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
85.1
0.79
0.8
77.3
36.7
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
53.6
0.09
1.9
72.58
38.5

Associated Gene:

Gene:
RGS21
Ensembl Gene ID:
ENSAPLG00000002310
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002313
8401695 - 8406387
4693