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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8404149_8406376_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8404149 - 8406376
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAAGGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGGATA
Flanking Amino Acid:
MPVKCCFHRSNIE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
62.3
0.28
1.1
59.3
40.8
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
47.9
-0.1
2
69.59
36.1

Associated Gene:

Gene:
RGS21
Ensembl Gene ID:
ENSAPLG00000002310
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002313
8401695 - 8406387
4693