About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8416045_8418643_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8416045 - 8418643

Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTACAGTAA

5'SS Class:
major

3'SS Sequence:
CTTCATTCTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TCTTCAT

U12 Branch Point Sequence:
CTTTTCTTCATT

Flanking Amino Acid:
TFIRKDAPKEVNLDFQTKEV

Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.7
0.51
1.1
65.4
36.8

Major BPS
87.4
0.93
0.9
87.9
29.5

Major PPT
81.8
0.71
0.8
73.2
36.9

Minor 5ss
34.3
-1.8
3.5
46.3
49

Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
RGS18

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8415790 - 8424982
9193