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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8418811_8421080_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8418811 - 8421080
Intron Length:
2270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
ESFDKLLSQKAGLDAFTKFL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.2
0.77
0.6
80.8
24.4
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
RGS18
Ensembl Gene ID:
ENSAPLG00000002011
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002077
8415790 - 8424982
9193