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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8424180_8424863_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8424180 - 8424863
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GCTACCTGAATT
Flanking Amino Acid:
MEEPNKASKAGAKQKRNRLS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.4
0.5
0.9
66.5
39.7
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
63.3
0.49
1.5
74.63
42

Associated Gene:

Gene:
RGS18
Ensembl Gene ID:
ENSAPLG00000002011
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002077
8415790 - 8424982
9193