About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_842511_844095_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
842511 - 844095
Intron Length:
1585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTGCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CATATATTAACC
Flanking Amino Acid:
KRIVLEKLRKALPAVLGPLQ
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
81.8
38.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.5
0.64
0.8
70
36.5
Minor 5ss
42.6
-0.8
2.9
56
41.5
Minor BPS
57
0.2
1.7
65.27
39.9

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664