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Intron Name: Anas_platyrhynchos_platyrhynchos_8_844177_851571_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

844177 - 851571

Intron Length:

7395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTAATTATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

TELKNLVKTFQLTNRNIIHK

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.8

0.67

0.9

73.6

40.3

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

RPAP2

Ensembl Gene ID:

ENSAPLG00000015165

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015834

834452 - 870115

35664