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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8444603_8446660_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8444603 - 8446660
Intron Length:
2058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CATTCCTGAATT
Flanking Amino Acid:
LAALPATCLKSAKDMKHRLG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
70.6
42.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
47.1
-0.3
3.4
73.3
43.6
Minor BPS
72.1
0.77
1.4
82.19
39.2

Associated Gene:

Gene:
RGS4
Ensembl Gene ID:
ENSAPLG00000000572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000859
8444068 - 8450382
6315