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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8446766_8447660_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8446766 - 8447660
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTGTCCTGATA
Flanking Amino Acid:
GKKEKVSPSQRVSQEEVKKW
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
66.3
0.37
1
61.9
40
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
49.1
-0
1.7
62.99
37.4

Associated Gene:

Gene:
RGS4
Ensembl Gene ID:
ENSAPLG00000000572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000859
8444068 - 8450382
6315