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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8448570_8449101_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8448570 - 8449101
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGGCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GTTCCATTTATG
Flanking Amino Acid:
EFISVQATKEVNLDSCTREK
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
65
0.34
1
58.2
37.6
Minor 5ss
40
-1.1
2.7
50.1
46.4
Minor BPS
48.7
-0.2
2
59.3
42

Associated Gene:

Gene:
RGS4
Ensembl Gene ID:
ENSAPLG00000000572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000859
8444068 - 8450382
6315