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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8469731_8469809_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8469731 - 8469809
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGCGGTGG
5'SS Class:
major
3'SS Sequence:
GCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
TCGCCCTGAGCC
Flanking Amino Acid:
SLAEESGTAVEQVVVDFERL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
50.3
42.9
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
29.8
-2.3
3.4
34.6
43.7
Minor BPS
50.5
-0
1.8
60.89
44

Associated Gene:

Gene:
HTATIP2
Ensembl Gene ID:
ENSAPLG00000016049
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016736
8467462 - 8471113
3652