Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8481849_8486166_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8481849 - 8486166

Intron Length:

4318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTACCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAA

U12 Branch Point Sequence:

GTTCTGTTACCT

Flanking Amino Acid:

SLPFPWLLFELCACLPNKCL

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

36.6

Major BPS

62.7

0.32

1.2

33.2

Major PPT

72.3

0.5

0.8

70.7

34.8

Minor 5ss

39.4

-1.2

2.9

52.4

44.8

Minor BPS

48.7

-0

2.3

73.56

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013923

8477702 - 8486379

8678