Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8495778_8496191_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8495778 - 8496191

Intron Length:

414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTGCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CATTTTTTATTT

Flanking Amino Acid:

KRQLDEVVLENQKLKVSSPK

Intron Amino Acid Position:

421

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.8

73.3

36.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.5

0.57

0.9

69.8

36.6

Minor 5ss

30.8

-2.2

3.3

41.8

Minor BPS

58.5

0.34

1.6

71.82

40.2

Associated Gene:

Gene:

ATF6

Ensembl Gene ID:

ENSAPLG00000013950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035269

8484127 - 8555289

71163

ENSAPLT00000014559

8484127 - 8555289

71163