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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_851641_869252_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
851641 - 869252
Intron Length:
17612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTTATTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
WTLIAIVLLSVLSQISPVFK
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.9
73.6
40.9
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664