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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8565582_8566233_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8565582 - 8566233
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGGGGG
5'SS Class:
major
3'SS Sequence:
TGCTGGTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGGGCCTGACGG
Flanking Amino Acid:
ADNQENILSQLLGDYDKVKA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.4
51.3
42.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
64
0.32
1.1
60.7
44.7
Minor 5ss
23
-3.1
3.3
29.7
43.1
Minor BPS
39.3
-0.9
2
37.34
44.7

Associated Gene:

Gene:
OLFML2B
Ensembl Gene ID:
ENSAPLG00000014054
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014639
8558169 - 8566362
8194