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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8577660_8577735_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8577660 - 8577735
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CCAACCCTAACC
Flanking Amino Acid:
VLRAAKELRCRFQRLDFVYL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
70.7
0.47
0.8
64.7
29.8
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
53.4
0.09
1.8
60.78
44

Associated Gene:

Gene:
HSD17B7
Ensembl Gene ID:
ENSAPLG00000014241
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014845
8574396 - 8581984
7589