Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8577940_8581967_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8577940 - 8581967

Intron Length:

4028

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCAGAGCAG

5'SS Class:

major

3'SS Sequence:

CGTGCCCTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATCAC

U12 Branch Point Sequence:

CGCTCCATCACC

Flanking Amino Acid:

LRRVLGGVGLALCRR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.9

0.26

1.3

45.2

42.6

Major BPS

53.4

0.09

1.1

57.3

37.7

Major PPT

69.1

0.43

0.9

61.5

34.9

Minor 5ss

17.3

-3.8

3.9

19.4

38.1

Minor BPS

48.7

-0.1

2.1

59.85

45.2

Associated Gene:

Gene:

HSD17B7

Ensembl Gene ID:

ENSAPLG00000014241

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014845

8574396 - 8581984

7589