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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8580180_8580303_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8580180 - 8580303
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CTGTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGAAG
U12 Branch Point Sequence:
GCTGTCTCCCCC
Flanking Amino Acid:
PEFTPGEEDTGCSGLVKPSP
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
45.3
-0.2
1.8
57.6
45.8
Major PPT
74.2
0.54
0.8
65.8
36
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
31.3
-1.4
3.4
46
43.2

Associated Gene:

Gene:
DDR2
Ensembl Gene ID:
ENSAPLG00000014258
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014849
8578508 - 8583514
5007