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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8590321_8590434_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8590321 - 8590434
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGCCCT
5'SS Class:
major
3'SS Sequence:
CTGTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGCCCCTGACCC
Flanking Amino Acid:
KFVFDIFQFSKKFVVYEVLR
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
60
44.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
76.3
0.59
0.9
69.7
36.7
Minor 5ss
40.8
-1
3.4
57.3
41.3
Minor BPS
50
-0
1.8
61.68
43.2

Associated Gene:

Gene:
UAP1
Ensembl Gene ID:
ENSAPLG00000014521
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015169
8588174 - 8592938
4765