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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8590579_8590687_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8590579 - 8590687
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGGCT
5'SS Class:
major
3'SS Sequence:
CGGCTTCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTGAC
U12 Branch Point Sequence:
GCGTGCCAAAGT
Flanking Amino Acid:
FTTAFLKDVVNTYEPQLQHH
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.3
37.7
Major BPS
54.8
0.12
1.1
46.8
37.9
Major PPT
71
0.47
0.9
64.8
36.4
Minor 5ss
32.5
-2
3.8
47.3
42.8
Minor BPS
38
-0.8
2.4
52.54
48.1

Associated Gene:

Gene:
UAP1
Ensembl Gene ID:
ENSAPLG00000014521
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015169
8588174 - 8592938
4765