Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8591750_8592060_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8591750 - 8592060

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGCGGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

CGCACCCCAACG

Flanking Amino Acid:

EEKGKISMAPDGNGGLYRAL

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.5

0.32

1.4

50.6

46.3

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

67.6

0.4

0.7

60.1

22.4

Minor 5ss

37.2

-1.4

3.2

47.3

48.1

Minor BPS

-0.5

46.06

45.8

Associated Gene:

Gene:

UAP1

Ensembl Gene ID:

ENSAPLG00000014521

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015169

8588174 - 8592938

4765