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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8592237_8592359_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8592237 - 8592359
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAG
U12 Branch Point Sequence:
TTTTCCCCCCCC
Flanking Amino Acid:
ERHGEPCCIPWYIMTSGRTM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.7
39
Major BPS
36
-0.8
1.5
37
40.7
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
37.9
-1.4
3
43.9
45.7
Minor BPS
36.6
-1
3.7
67.47
44.1

Associated Gene:

Gene:
UAP1
Ensembl Gene ID:
ENSAPLG00000014521
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015169
8588174 - 8592938
4765