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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8596189_8596546_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8596189 - 8596546
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
GAGGCTTCACTT
Flanking Amino Acid:
IPKENPGKGQVFVEYANAGD
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
43.4
-0.4
1.8
53.44
42.5

Associated Gene:

Gene:
UHMK1
Ensembl Gene ID:
ENSAPLG00000014799
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015438
8596042 - 8605275
9234