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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8597423_8600371_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8597423 - 8600371
Intron Length:
2949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
GGGTGTCACGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTTCTCTAACT
Flanking Amino Acid:
LCSPFFSIPFAPHIEDLVML
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
58.3
0.19
1.1
50.9
43
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
72.1
0.77
1.7
88.42
36.8

Associated Gene:

Gene:
UHMK1
Ensembl Gene ID:
ENSAPLG00000014799
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015438
8596042 - 8605275
9234