Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8601688_8604464_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8601688 - 8604464

Intron Length:

2777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGGAAC

5'SS Class:

major

3'SS Sequence:

CGGCCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

GCAAAATTAACC

Flanking Amino Acid:

FGLSFKEGNQDVKYIQTDGY

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

66.9

38.3

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

0.49

0.9

65.1

36.2

Minor 5ss

-1.7

2.9

42.8

44.4

Minor BPS

47.9

-0.1

1.8

55.59

41.6

Associated Gene:

Gene:

UHMK1

Ensembl Gene ID:

ENSAPLG00000014799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015438

8596042 - 8605275

9234