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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8604758_8604977_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8604758 - 8604977
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CGTTCCTGATGT
Flanking Amino Acid:
LEHLRGHRNIVTLYGVFTNH
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
50
46.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.5
0.64
0.8
72.6
32.3
Minor 5ss
34.6
-1.7
3.6
46.7
48.7
Minor BPS
49
0
2.1
69.48
46.9

Associated Gene:

Gene:
UHMK1
Ensembl Gene ID:
ENSAPLG00000014799
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015438
8596042 - 8605275
9234