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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8616443_8626394_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8616443 - 8626394
Intron Length:
9952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CAGGGCTCACCC
Flanking Amino Acid:
EIVTAMRRIRYEFKAKNIKK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
39
-0.8
2.1
42.92
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014905
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015540
8612440 - 8627731
15292